University of California
Maintenance of Microirrigation Systems
Biological Clogging Problems
Well Treatment for Iron Bacteria
Groundwater being pumped into a standpipe Photo: L. Schwankl
The iron bacteria are a filamentous bacteria that will show up as a slimy contaminant in the microirrigation system. The filamentous contaminant can act as a net to catch particulate contaminants, further increasing the risk of clogging. A “swampy” smell is also characteristic of water contaminated with iron bacteria.
The common treatment for iron bacteria in a well is to chlorinate the well with a high concentration of chlorine (shock treatment). It is important to leave this chlorinated water in the well for at least a day, longer is better. Then the well should be flushed clean. There are a number of excellent web sites describing the shock chlorine treatment of a well. Simply search using “Iron bacteria in well”.